PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G309400.1
Common NameB456_007G309400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 707aa    MW: 76381.1 Da    PI: 6.1394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G309400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16442488455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A++Y+k Lq
  Gorai.007G309400.1 442 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIDYLKTLQ 488
                         6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-20436497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-20436497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.451438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-17441492No hitNo description
PfamPF000101.2E-13442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MPLSELYRMA RGKLDSSQDK NPSSSTDPSI VPEDDFVELV WENGQISMQG QSSVARKVPA  60
CNSLQSHSFK IRDKYIGNGG NSSKMGKFGV VDAVSSEVLM SAPSHDDDVV PWLKYSENEC  120
SDMLPGLSGL TTNKIPTDGS LASFNQRRQS ISDSFTVSLN AAADFKQGKL AKVPKPADDE  180
ARLRSGTSEW PQLCQVSSSY LRSRNLESIG NNPSHAFFRD TMGVQLSDET LRGVKMQKQD  240
PVAPCNNTVL MNFSHFSRPA ALVKASLQNI GAMARIESKE TGFAASTRGP VDSKAIDSNI  300
KLQKENFLHC HSTIVPMKTD IKQSEAKSPD EPVAAEPNDA ICEEYVLKSD KISSQVIDEN  360
ASKCLPESGK AVESVLAASV FCENSVERAS DDPVVHNLKK KNHDNEEFEC PSEDAEEESV  420
GVKKAVPTRG GKGFKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA  480
IDYLKTLQLQ VQIMSMRAGL SVPPMMLPTG MQHMHATQMA YFSSMGFGMG LGMGFGMPFP  540
ETNTIASAFP MVQVPPVCGA PFSGSGPHLS GSTAFHEMPG ANLPLYGLHG QGLPMSMPGA  600
PLFPIPGGHL MKSAIGLSAC GLGGPMDNMD SATASSSKDP IQNINSQVAQ NTNINSSMNQ  660
TSTQYQTANE SFQQPAEVQE NGRASEITGS VPFRSTDGDK KLPDRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434328.10.0PREDICTED: transcription factor PIF3
TrEMBLA0A0D2R2I00.0A0A0D2R2I0_G
STRINGVIT_14s0060g00260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-73phytochrome interacting factor 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]